| Sat 06/08/16 | Atherton Collieries v Bacup Borough | 3-2 | | | | |
| Sat 13/08/16 | City of Liverpool FC v Bacup Borough * | 3-2 | | | | |
| Wed 17/08/16 | Bacup Borough v Atherton LR | 2-2 | | | |  |
| Sat 20/08/16 | Carlisle City v Bacup Borough | 0-0 | | | | |
| Wed 24/08/16 | Bacup Borough v Silsden * | 2-1 | |  | | |
| Sat 27/08/16 | Bacup Borough v Ashton Town * | 4-0 | | | | |
| Tue 30/08/16 | Chadderton v Bacup Borough * | 1-0 | | | | |
| Sat 03/09/16 | Bacup Borough v Litherland REMYCA * | 0-3 | | | | |
| Wed 07/09/16 | Bacup Borough v Charnock Richard | 1-4 |  | | | |
| Sat 10/09/16 | Sandbach United v Bacup Borough | 1-0 | | | | |
| Wed 14/09/16 | Bacup Borough v Holker Old Boys | 2-0 | | | | |
| Sat 17/09/16 | Bacup Borough v FC Oswestry Town | 0-1 | | | | |
| Sat 24/09/16 | Congleton Town v Bacup Borough | 3-3 | | | | |
| Wed 28/09/16 | Bacup Borough v Padiham | 0-1 | | | | |
| Sat 01/10/16 | Eccleshall v Bacup Borough | 1-2 | | | | |
| Mon 03/10/16 | Daisy Hill v Bacup Borough | 1-2 | | | | |
| Sat 08/10/16 | Bacup Borough v Chadderton | 1-1 | | | | |
| Sat 15/10/16 | Bacup Borough v Sandbach United | 0-2 | | | | |
| Wed 19/10/16 | Prestwich Heys v Bacup Borough | 5-0 | | | | |
| Sat 29/10/16 | Runcorn Town v Bacup Borough | 3-2 | | | | |
| Tue 01/11/16 | Atherton LR v Bacup Borough | 1-1 | | | | |
| Sat 05/11/16 | Litherland REMYCA v Bacup Borough | 4-2 | | | | |
| Tue 15/11/16 | AFC Blackpool v Bacup Borough | 2-3 | | | | |
| Sat 19/11/16 | FC Oswestry Town v Bacup Borough | 3-0 | | | | |
| Sat 10/12/16 | St Helens Town v Bacup Borough | 2-0 | | | | |
| Sat 17/12/16 | Bacup Borough v Cheadle Town | 2-3 | | | | |
| Mon 26/12/16 | Silsden v Bacup Borough | 2-1 | | | | |
| Sat 31/12/16 | Charnock Richard v Bacup Borough | 3-0 | | | | |
| Sat 14/01/17 | Stockport Town v Bacup Borough | 1-1 | | | | |
| Sat 21/01/17 | Bacup Borough v Carlisle City | 1-3 | | | | |
| Sat 28/01/17 | Alsager Town v Bacup Borough | 5-0 | | | | |
| Sat 11/02/17 | Widnes v Bacup Borough | 2-0 | | | | |
| Sat 18/02/17 | Bacup Borough v Alsager Town | 0-4 | | |  | |
| Sat 25/02/17 | Cheadle Town v Bacup Borough | 0-1 | | | | |
| Sat 01/04/17 | Bacup Borough v Stockport Town | 2-1 | | | | |
| Tue 04/04/17 | Holker Old Boys v Bacup Borough | 1-1 | | | | |
| Sat 15/04/17 | Bacup Borough v Whitchurch Alport | 0-0 | | | | |
| Sat 22/04/17 | Bacup Borough v Eccleshall | 1-2 | | | | |
| Wed 26/04/17 | Bacup Borough v Daisy Hill | 2-1 | | | | |
| Sat 29/04/17 | Bacup Borough v City of Liverpool FC | 1-2 | | | | |
